PPDB

 The Plant Proteome Database

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AT3G59890.1   Dihydrodipicolinate reductase%2C bacterial/plant
Lab Annot. dihydrodipicolinate reductase
Mapman: 13.1.3.5.2 amino acid metabolism.synthesis.aspartate family.lysine.dihydrodipicolinate reductase
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G59890.2 11Arabidopsis thaliana034310010039 (33)C
AT2G44040.1 11Arabidopsis thaliana03508490111 (76)C
Os02g24020.1 7Oryza sativa8E-150322638028 (28)C
Os03g14120.1 7Oryza sativa6E-14327368860 (0)M
Os03g14120.2 7Oryza sativa6E-14327368860 (0)M
Zm00001eb176170_P002 agpv5Zea mays3E-15028668840 (0)M
Zm00001eb176170_P001 agpv5Zea mays3E-15028668840 (0)M
v1_GRMZM2G090241_P01 4a53Zea mays3E-150286688423 (23)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DapB_C(1) DapB_N(1) Nitro_FeMo-Co(2)
TargetP: Chloroplast (Class 2 C0.763; M0.119; S0.023; _0.021)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 349 aa (-cTP 296)
Molecular Weight 37.87 kDA(-cTP 32.06)
PI 6.80(-cTP 5.59)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
119Detail       root [B. rapa] plastid stroma 
303Detail       leaf [A. thaliana] chloroplast stromawild-type
339Detail       leaf [A. thaliana] chloroplast stromawild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
641Detail        [A. thaliana] plastid nucleoid (crude) wild-type
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1526Detail       leaf [A. thaliana] co-IP GST-ClpS 100ug bait stromaclpc1 x clps (rep. 2)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1530Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP wild-type (rep. 1)
1531Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP wild-type (rep. 1)
1532Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP clps (rep. 1)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1943Detail       leaf [A. thaliana] stroma WT stromawild-type
1944Detail       leaf [A. thaliana] stroma UVR stromaUVR
1946Detail       leaf [A. thaliana] stroma UVR stromawild-type
1947Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1948Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1949Detail       leaf [A. thaliana] stroma ClpS stromaclpS
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2179Detail       leaf [A. thaliana] stroma Clp GST ClpF x ClpS1
2182Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2183Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2184Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2185Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2312Detail       leaf [A. thaliana] thylakoids thylakoid membrane 
2313Detail       leaf [A. thaliana] thylakoids thylakoid membrane 
2314Detail       leaf [A. thaliana] thylakoids thylakoid membrane 
2315Detail       leaf [A. thaliana] thylakoids thylakoid membrane 
2317Detail       leaf [A. thaliana] PG plastoglobule 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))
21173025(root proteome)
21515685(GreenCut2)

Comparative Proteomics Data

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