PPDB

The Plant Proteome Database

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AT3G59600.1   RNA polymerase Rpb8

Lab Annot. RNA polymerase Rpb8
Mapman: 27.2 RNA.transcription
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G54250.1 11Arabidopsis thaliana1E-10114695990 (0)_
Os06g48230.1 7Oryza sativa3E-68142658313 (13)C
Os03g62870.2 7Oryza sativa3E-6614563800 (0)_
Os03g62870.1 7Oryza sativa3E-6614563800 (0)_
v1_GRMZM2G034326_P02 4a53Zea mays2E-67142668029 (29)_
v1_GRMZM2G034326_P01 4a53Zea mays2E-67142668029 (29)_
Zm00001eb210850_P004 agpv5Zea mays2E-6714266800 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: RNA_pol_Rpb8(1)
TargetP: Cytoplasm (Class 3 C0.176; M0.061; S0.241; _0.770)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 146 aa (-cTP 117)
Molecular Weight 16.60 kDA(-cTP )
PI 5.93(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1432Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1829Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Fluctuating light
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help