PPDB

PPDB	The Plant Proteome Database

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AT3G59500.1 Integral membrane HRF1 family protein

Lab Annot.

integral membrane HRF1 protein
Mapman: 35.1 not assigned.no ontology

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G59500.2 11 Arabidopsis thaliana 0 269 100 100 0 (0) M
AT1G30890.1 11 Arabidopsis thaliana 1E-175 268 87 92 0 (0) _
AT1G30890.2 11 Arabidopsis thaliana 1E-175 268 87 92 0 (0) _
Os04g08320.1 7 Oryza sativa 4E-136 278 66 79 0 (0) _
Os06g41590.3 7 Oryza sativa 4E-127 266 66 80 0 (0) _
Os06g41590.2 7 Oryza sativa 4E-127 266 66 80 0 (0) _
Zm00001eb134470_P001 agpv5 Zea mays 8E-132 265 66 79 0 (0) _
v1_GRMZM2G135599_P01 4a53 Zea mays 8E-132 265 66 79 2 (2) _
v1_GRMZM2G135599_P02 4a53 Zea mays 8E-132 265 66 79 2 (2) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Nucleoporin_FG2(1) YIF1(1)
TargetP:	Mitochondria (Class 5 C0.127; M0.550; S0.053; _0.513)
Predotar:
Subcel. Location:
TM-HMM prediction:	4 TMs
Aramemnon:	5 TMs
TAT position:
Length	269 aa (-cTP 233)
Molecular Weight	30.17 kDA(-cTP )
PI	9.31(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1618	Detail								[A. thaliana]		m48
1766	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Met1-1
1829	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Met1-1 Fluctuating light

* For details about the exprimental sources click here.

Published Proteomics Data

16618929(ER-LOPIT-callus)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
21173025(root proteome)
22430844(Golgi-cell-culture)
21988472(vacuole (unfiltered data))

Comparative Proteomics Data