PPDB

 The Plant Proteome Database

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AT3G59300.1   Pentatricopeptide repeat (PPR) superfamily protein
Lab Annot. HugZ-3 & PPR
Mapman: 35.2 not assigned.unknown
Curated Location plastid
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G59300.3 11Arabidopsis thaliana045299990 (0)C
AT3G59300.2 11Arabidopsis thaliana045992920 (0)C
AT5G24060.1 11Arabidopsis thaliana5E-474602748184 (25)C
Os01g67370.1 7Oryza sativa7E-11842846620 (0)M
Os01g67370.2 7Oryza sativa6E-9742842560 (0)M
Os01g67370.3 7Oryza sativa4E-9336745600 (0)M
Zm00001eb144530_P002 agpv5Zea mays2E-12244247610 (0)M
Zm00001eb144530_P003 agpv5Zea mays2E-12244247610 (0)M
v1_GRMZM2G141600_P02 4a53Zea mays2E-12244247610 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF2470(1)
TargetP: Chloroplast (Class 2 C0.872; M0.036; S0.030; _0.152)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 459 aa (-cTP 396)
Molecular Weight 51.59 kDA(-cTP 44.83)
PI 5.18(-cTP 4.95)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2289Detail        [A. thaliana] Clp C1 TRAP
2290Detail        [A. thaliana] Clp C1 TRAP
2291Detail        [A. thaliana] Clp C1 TRAP
2299Detail        [A. thaliana] Clp C1 TRAP
2305Detail        [A. thaliana] Clp C1 TRAP
2306Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help