PPDB

 The Plant Proteome Database

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AT3G59040.1   Tetratricopeptide repeat (TPR)-like superfamily protein
Lab Annot. pentatricopeptide repeat (PPR) protein (model with cTP)
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein
Curated Location plastid nucleoid (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G59040.2 11Arabidopsis thaliana056510010015 (14)S
AT5G02860.1 11Arabidopsis thaliana4E-4538928490 (0)C
AT5G02860.5 11Arabidopsis thaliana4E-4538928490 (0)C
Os08g09270.1 7Oryza sativa048569842 (2)C
Os02g07360.1 7Oryza sativa2E-4743927460 (0)M
Os07g11280.1 7Oryza sativa4E-4436826510 (0)_
GRMZM2G005938_P01 3.21Zea mays0535648050 (48)C
Zm00001eb413390_P001 agpv5Zea mays053564800 (0)C
v1_GRMZM2G005938_P01 4a53Zea mays0535648037 (37)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: AEP1(4) Clathrin(3) Cwf_Cwc_15(1) DUF1884(1) MRP-S27(2) PPR(10) PPR_1(9) PPR_2(1
TargetP: Chloroplast (Class 2 C0.749; M0.068; S0.062; _0.142)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 583 aa (-cTP 541)
Molecular Weight 66.16 kDA(-cTP 61.39)
PI 5.46(-cTP 5.09)

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
542Detail       leaf [A. thaliana] stroma (FPLC) >500 kDa (HMB) wild-type
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1944Detail       leaf [A. thaliana] stroma UVR stromaUVR
1947Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1999Detail       leaf [A. thaliana] stroma ClpS stromaclpS1

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

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