PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT3G57790.1 Pectin lyase-like superfamily protein

Lab Annot.

glycoside hydrolase family 28 protein / polygalacturonase (pectinase) protein
Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G57790.2 11 Arabidopsis thaliana 0 490 100 100 0 (0) S
AT3G42950.1 11 Arabidopsis thaliana 1E-26 314 30 46 0 (0) S
AT5G41870.1 11 Arabidopsis thaliana 4E-25 310 31 47 0 (0) S
Os09g31270.1 7 Oryza sativa 0 436 64 78 0 (0) S
Os09g26800.1 7 Oryza sativa 2E-26 334 28 46 0 (0) C
Os03g61800.1 7 Oryza sativa 4E-25 356 26 46 0 (0) S
GRMZM2G137077_P01 3.21 Zea mays 0 439 63 77 0 (0) S
v1_GRMZM2G137077_P01 4a53 Zea mays 0 439 63 77 0 (0) S
Zm00001eb316640_P003 agpv5 Zea mays 0 439 63 77 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Beta_helix(2) Glyco_hydro_28(1) NosD(3) Pectate_lyase_3(4)
TargetP:	Secreted (Class 3 C0.033; M0.110; S0.709; _0.098)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	490 aa (-cTP 412)
Molecular Weight	54.10 kDA(-cTP )
PI	4.79(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1207	Detail								leaf [A. thaliana]	total leaf tissue	clpp3 null
1208	Detail								leaf [A. thaliana]	total leaf tissue	clpp3 null
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)

* For details about the exprimental sources click here.

Published Proteomics Data

17151019(vacuole - suspension cell)
19525416(leaf (wt and clpr4-1 mutant))
21173025(root proteome)

Comparative Proteomics Data