PPDB

PPDB	The Plant Proteome Database

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AT3G57660.1 nuclear RNA polymerase A1

Lab Annot.

NRPA1 (nuclear RNA polymerase A 1); DNA binding / DNA-directed RNA polymerase
Mapman: 27.2 RNA.transcription

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G57660.2 11 Arabidopsis thaliana 0 1670 99 99 0 (0) _
AT5G60040.1 11 Arabidopsis thaliana 1E-129 991 30 47 0 (0) _
AT5G60040.2 11 Arabidopsis thaliana 2E-128 998 30 47 0 (0) _
Os04g41490.1 7 Oryza sativa 2E-128 967 32 48 0 (0) _
Os05g05860.1 7 Oryza sativa 4E-99 677 33 50 13 (13) _
Os06g40950.1 7 Oryza sativa 2E-72 360 41 57 0 (0) _
Zm00001eb016000_P004 agpv5 Zea mays 0 1718 47 63 0 (0) _
Zm00001eb016000_P003 agpv5 Zea mays 0 1629 47 63 0 (0) _
Zm00001eb016000_P001 agpv5 Zea mays 0 1556 48 64 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	RNA_pol_Rpb1_1(1) RNA_pol_Rpb1_2(1) RNA_pol_Rpb1_3(1) RNA_pol_Rpb1_4(1) RNA_pol_
TargetP:	Secreted (Class 4 C0.144; M0.143; S0.418; _0.178)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	1670 aa (-cTP 1648)
Molecular Weight	187.57 kDA(-cTP )
PI	5.93(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
451	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
1407	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
2013	Detail								leaf [A. thaliana]	total leaf tissue	wt
2320	Detail								[A. thaliana]	Thylakoids plastoglobule
2321	Detail								leaf [A. thaliana]
2324	Detail								leaf [A. thaliana]	THYLAKOIDS thylakoid membrane
2325	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane	abc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

14617066(Nuclear proteome)
21533090(plasmodesmata-crude)
21166475(cytosolic-fractions-crude)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)

Comparative Proteomics Data