PPDB

 The Plant Proteome Database

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AT3G57280.1   Transmembrane proteins 14C
Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location envelope (Pubmed: 23198870 )

TAIR curated location: chloroplast inner membrane12775770
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G20510.1 11Arabidopsis thaliana2E-1811739582 (2)_
AT1G50740.1 11Arabidopsis thaliana5E-1711938580 (0)S
AT2G38550.1 11Arabidopsis thaliana9E-151693050109 (97)C
Os04g39450.1 7Oryza sativa2E-4516151620 (0)M
Os06g19690.1 7Oryza sativa3E-4419442605 (5)M
Os04g39450.2 7Oryza sativa3E-2812650580 (0)M
GRMZM2G173649_P01 3.21Zea mays8E-4015551650 (0)C
GRMZM2G173649_P04 3.21Zea mays8E-4015551650 (0)C
v1_GRMZM2G173649_P01 4a53Zea mays8E-4015551650 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF4213(2) Tmemb_14(1)
TargetP: Chloroplast (Class 2 C0.890; M0.222; S0.024; _0.011)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 3 TMs
Aramemnon: 4 TMs
TAT position:
Length 226 aa (-cTP 193)
Molecular Weight 24.35 kDA(-cTP 20.53)
PI 9.18(-cTP 8.90)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
342Detail       leaf [A. thaliana] chloroplast low density membranewild-type
877Detail       leaf [A. thaliana] chloroplast stromawild-type
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1440Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 2)
1441Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 3)
1442Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 1)
1443Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 2)
1444Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1447Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 3)
1448Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 1)
1449Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 2)
1457Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 3)
1611Detail       leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1612Detail       Natural Senescence leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1613Detail       Natural Senescence leaf [A. thaliana]  
1614Detail       Natural Senescence leaf [A. thaliana]  
1615Detail       Natural Senescence leaf [A. thaliana]  
1616Detail       Natural Senescence leaf [A. thaliana]  
1626Detail       Rosettes [A. thaliana] k1xk3
1628Detail       Rosettes [A. thaliana] total leaf tissue thylakoid + envelopek1xk3
1629Detail       Rosettes [A. thaliana] Wild-type
1765Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1829Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Fluctuating light
1936Detail       leaf [A. thaliana] chloroplast Prep1_Prep2
1937Detail       leaf [A. thaliana] chloroplast Prep1_Prep2
1938Detail       leaf [A. thaliana] chloroplast Prep1_Prep2
1984Detail       leaf [A. thaliana] plastid wild-type
1985Detail       leaf [A. thaliana] plastid wild-type
1987Detail       leaf [A. thaliana] plastid Prep1_Prep2
1988Detail       leaf [A. thaliana] plastid Prep1_Prep2
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2017Detail       leaf [A. thaliana] total leaf tissue wild-type
2132Detail       leaf [A. thaliana] chloroplast fractionation MSH1
2286Detail        [A. thaliana] Clp C1 WT
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

 15028209(Total chloroplast)
12938931(Total chloroplast envelope)
12766230(Total chloroplast envelope)
18431481(chloroplast)
19995728(proplastid (Brassica napus))
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)
21173025(root proteome)
21515685(GreenCut2)

Comparative Proteomics Data

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