PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G57150.1   homologue of NAP57
Lab Annot. homologue of NAP57
Mapman: 28.1 DNA.synthesis/chromatin structure
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G14460.1 11Arabidopsis thaliana3E-23202335054 (16)C
Os07g44190.1 7Oryza sativa046177857 (7)C
Os03g25450.1 7Oryza sativa055669780 (0)_
Os04g48700.1 7Oryza sativa1E-9516683900 (0)_
Zm00001eb127780_P001 agpv5Zea mays055071800 (0)_
v1_GRMZM2G172956_P02 4a53Zea mays0550718031 (31)_
GRMZM2G172956_P02 3.21Zea mays0550718017 (17)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: CDC27(1) DKCLD(2) PUA(1) SID-1_RNA_chan(1) TruB_C_2(1) TruB_N(1) UPF0113(1)
TargetP: Cytoplasm (Class 1 C0.064; M0.078; S0.057; _0.966)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 565 aa (-cTP 509)
Molecular Weight 63.03 kDA(-cTP )
PI 9.19(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
325Detail       BY2 cell suspension [Tobacco] cell wall enriched wild-type
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1545Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1566Detail       leaf [A. thaliana] TiO2 thylakoid membranek2k3
2239Detail       seedlings [A. thaliana] total tissue gfs9
2240Detail       seedlings [A. thaliana] total tissue gfs9
2241Detail       seedlings [A. thaliana] total tissue gfs9
2246Detail       seedlings [A. thaliana] total tissue gfs9
2249Detail       seedlings [A. thaliana] total tissue gfs9
2258Detail       leaf [A. thaliana] total seedlings gfs9
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

 15496452(nucleolus)
18463617(suspension cells-phosphorylated proteins)
19200160(flower-stage 12)
19245862(nuclear phosphoproteins (seedlings & cell culture))
19334764(plasma membrane (cell culture))
19376835(leaf phosphoproteins)
20166762(guard cells (Arabidopsis))
21533090(plasmodesmata-crude)
21325567(root-proteome (wt & det3))
21166475(cytosolic-fractions-crude)
20733066(phosphoproteome-ABA-leaf)
21768351(Leaf-Phosphoproteome)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help