PPDB

The Plant Proteome Database

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AT3G56830.1   YCF20-like protein (DUF565)

Lab Annot. YCF-20 npq6 homologue
Mapman: 35.2 not assigned.unknown
Curated Location plastid (Pubmed: 23198870 20087601 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G56830.6 11Arabidopsis thaliana5E-1371881001000 (0)C
AT3G56830.8 11Arabidopsis thaliana5E-1371881001000 (0)C
AT3G56830.7 11Arabidopsis thaliana5E-1371881001000 (0)C
Os03g63554.1 7Oryza sativa2E-4515053660 (0)C
Os09g11520.1 7Oryza sativa4E-2610748630 (0)M
Os02g13910.1 7Oryza sativa2E-169746610 (0)M
Zm00001eb210610_P001 agpv5Zea mays6E-4415550650 (0)C
Zm00001eb210610_P002 agpv5Zea mays6E-4415550650 (0)C
Zm00001eb210610_P003 agpv5Zea mays6E-4415550650 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF565(1)
TargetP: Chloroplast (Class 5 C0.448; M0.179; S0.002; _0.368)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 2 TMs
Aramemnon: 2 TMs
TAT position:
Length 188 aa (-cTP 129)
Molecular Weight 20.84 kDA(-cTP 14.18)
PI 10.27(-cTP 9.94)

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

19995723(chloroplast reference proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help