PPDB

The Plant Proteome Database

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AT3G56350.1   Iron/manganese superoxide dismutase family protein

Lab Annot. manganese superoxide dismutase
Mapman: 21.6 redox.dismutases and catalases
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G10920.1 11Arabidopsis thaliana5E-1152067484423 (321)M
AT3G10920.2 11Arabidopsis thaliana2E-1122067383387 (290)M
AT5G23310.1 11Arabidopsis thaliana1E-301933649148 (135)C
Os05g25850.1 7Oryza sativa8E-105205697971 (71)S
Os05g25850.2 7Oryza sativa4E-6414365754 (4)S
Os06g05110.1 7Oryza sativa1E-25189344817 (17)C
GRMZM2G124455_P01 3.21Zea mays5E-105201708169 (69)M
Zm00001eb347200_P004 agpv5Zea mays5E-10520170810 (0)M
GRMZM2G059991_P01 3.21Zea mays8E-105202698068 (68)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Sod_Fe_C(2) Sod_Fe_N(1)
TargetP: Secreted (Class 2 C0.072; M0.013; S0.957; _0.164)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 241 aa (-cTP 211)
Molecular Weight 26.89 kDA(-cTP )
PI 6.25(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1930Detail       leaf [A. thaliana] total leaf tissue Col_0 Wild-type
1931Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
1932Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2291Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

11402211,12068122,15047896,16679420,17028149(seed-all-Jobpapers)
17293592(total seedlings û light and dark grown)
18599647(seed proteome)
18436743(specific to seeds)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help