PPDB

PPDB	The Plant Proteome Database

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AT3G56140.1 DUF399 family protein%2C putative (DUF399 and DUF3411)

Lab Annot.

reticulate family member RER6 (DUF399 domain)
Mapman: 35.2 not assigned.unknown

Curated Location

envelope-inner-integral (Pubmed: 23596191 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G56140.3 11 Arabidopsis thaliana 0 745 100 100 0 (0) C
AT2G40400.2 11 Arabidopsis thaliana 0 621 85 93 1 (1) C
AT2G40400.1 11 Arabidopsis thaliana 0 621 85 93 1 (1) C
Os05g39680.1 7 Oryza sativa 0 654 64 78 8 (8) _
Os01g61120.1 7 Oryza sativa 0 688 63 77 0 (0) C
Os01g72710.1 7 Oryza sativa 2E-59 291 39 60 4 (4) C
v1_GRMZM2G034120_P01 4a53 Zea mays 0 692 60 74 38 (38) C
Zm00001eb149270_P001 agpv5 Zea mays 0 622 63 77 0 (0) C
Zm00001eb149270_P002 agpv5 Zea mays 0 625 67 82 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Cofac_haem_bdg(1) RETICULATA-like(1)
TargetP:	Chloroplast (Class 3 C0.788; M0.268; S0.002; _0.022)
Predotar:
Subcel. Location:	Lumen
TM-HMM prediction:	No
Aramemnon:	2 TMs
TAT position:	65
Length	745 aa (-cTP 695) (-lTP 655)
Molecular Weight	82.25 kDA(-cTP 76.50)(-lTP 72.33)
PI	7.03(-cTP 5.81)(-lTP 5.605)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
343	Detail								leaf [A. thaliana]	chloroplast thylakoid membrane	wild-type
451	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
876	Detail								leaf [A. thaliana]	chloroplast thylakoid membrane	wild-type
1421	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1439	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 1)
1441	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 3)
1828	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Col-0 Fluctuating light
1832	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Col-0 Normal light
1833	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Met1-1
1935	Detail								leaf [A. thaliana]	chloroplast	wild-type
1984	Detail								leaf [A. thaliana]	plastid	wild-type
1985	Detail								leaf [A. thaliana]	plastid	wild-type
2320	Detail								[A. thaliana]	Thylakoids plastoglobule
2321	Detail								leaf [A. thaliana]
2324	Detail								leaf [A. thaliana]	THYLAKOIDS thylakoid membrane
2325	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane	abc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

18431481(chloroplast)
19995723(chloroplast reference proteome)

Comparative Proteomics Data