PPDB

PPDB	The Plant Proteome Database

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AT3G55930.1 pre-mRNA-splicing factor

Lab Annot.

RNA splicing factor-related
Mapman: 27.1.1 RNA.processing.splicing

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G28060.3 11 Arabidopsis thaliana 8E-119 273 77 84 0 (0) _
AT1G28060.2 11 Arabidopsis thaliana 8E-119 273 77 84 0 (0) _
AT1G28060.1 11 Arabidopsis thaliana 8E-119 273 77 84 0 (0) _
Os09g07500.3 7 Oryza sativa 2E-93 273 60 76 0 (0) _
Os09g07500.1 7 Oryza sativa 9E-93 273 60 76 3 (3) _
Os09g07500.2 7 Oryza sativa 2E-92 273 60 76 0 (0) C
Zm00001eb204030_P003 agpv5 Zea mays 2E-102 271 62 76 0 (0) _
Zm00001eb204030_P001 agpv5 Zea mays 4E-101 271 62 76 0 (0) C
Zm00001eb238080_P001 agpv5 Zea mays 1E-98 267 62 76 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	BRICHOS(1) DUF1115(1) DUF5832(2) Lum_binding(2) PRP3(2)
TargetP:	Cytoplasm (Class 2 C0.149; M0.051; S0.038; _0.874)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	270 aa (-cTP 214)
Molecular Weight	31.35 kDA(-cTP )
PI	9.53(-cTP )

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data