PPDB

PPDB	The Plant Proteome Database

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AT3G55760.1 hypothetical protein

Lab Annot.

LIKE EARLY STARVATION 1 (LESV)
Mapman: 2.2.2 major CHO metabolism.degradation.starch

Curated Location

plastid stroma (Pubmed: 23198870 18431481 27207856 ) (supported by in-house exprements)

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G55760.2 11 Arabidopsis thaliana 0 578 100 100 141 (56) C
AT3G55760.3 11 Arabidopsis thaliana 0 578 100 100 128 (43) C
AT1G42430.2 11 Arabidopsis thaliana 3E-60 353 38 56 0 (0) _
Os11g37560.2 7 Oryza sativa 0 574 52 65 0 (0) M
Os11g37560.1 7 Oryza sativa 0 582 52 64 0 (0) M
Os03g04100.1 7 Oryza sativa 3E-61 301 42 61 0 (0) M
Zm00001eb200610_P001 agpv5 Zea mays 0 548 53 67 0 (0) C
v1_GRMZM2G069092_P01 4a53 Zea mays 0 548 53 67 3 (3) C
GRMZM2G069092_P01 3.21 Zea mays 0 548 53 67 10 (10) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	D-ser_dehydrat(1)
TargetP:	Chloroplast (Class 4 C0.726; M0.459; S0.010; _0.032)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	578 aa (-cTP 522)
Molecular Weight	65.57 kDA(-cTP 59.46)
PI	5.32(-cTP 5.04)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
102	Detail								petal [B. oleracea]	plastid stroma	Alboglabra
151	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
303	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
326	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
339	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
640	Detail								leaf [A. thaliana]	plastid nucleoid	wild-type
869	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
870	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
871	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
873	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
874	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
1399	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1401	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1402	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	wild-type
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1431	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	wild-type (rep. 2)
1454	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 2)
1455	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 1)
1456	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 2)
1457	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 3)
1461	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 (rep. 1)
1462	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 (rep. 2)
1463	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 (rep. 3)
1483	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 2)
1484	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 2)
1486	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 3)
1517	Detail								leaf [A. thaliana]		wild-type
1518	Detail								leaf [A. thaliana]		wild-type
1520	Detail								leaf [A. thaliana]		wild-type
1525	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1528	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1933	Detail								leaf [A. thaliana]	chloroplast	wild-type
1942	Detail								leaf [A. thaliana]	stroma WT stroma	wild-type
1943	Detail								leaf [A. thaliana]	stroma WT stroma	wild-type
1944	Detail								leaf [A. thaliana]	stroma UVR stroma	UVR
1949	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS
1984	Detail								leaf [A. thaliana]	plastid	wild-type
1999	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS1
2000	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS1
2001	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS1
2112	Detail								leaf [A. thaliana]	Stroma stroma	wt
2113	Detail								leaf [A. thaliana]	Stroma stroma	wt
2114	Detail								leaf [A. thaliana]	Stroma stroma	wt
2115	Detail								leaf [A. thaliana]	Stroma stroma	cGep
2116	Detail								leaf [A. thaliana]	Stroma stroma	cGep
2132	Detail								leaf [A. thaliana]	chloroplast fractionation	MSH1
2191	Detail								[A. thaliana]	plastid stroma stroma	P3-trap-strepII 40
2296	Detail								[A. thaliana]		Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

15028209(Total chloroplast)
16207701(chloroplast stroma)
18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))
17216043(leaf)
19888209(leaves)
20706207(cell cycle interactome (cell culture))
19995723(chloroplast reference proteome)
21173025(root proteome)

Comparative Proteomics Data