PPDB

PPDB	The Plant Proteome Database

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AT3G55530.1 RING/U-box superfamily protein

Lab Annot.

RING/U-box protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G04790.1 11 Arabidopsis thaliana 4E-16 126 35 46 0 (0) _
AT3G58720.2 11 Arabidopsis thaliana 2E-12 50 54 62 0 (0) C
AT3G58720.3 11 Arabidopsis thaliana 3E-12 50 54 62 0 (0) C
Os03g16570.2 7 Oryza sativa 1E-125 285 69 76 0 (0) _
Os03g16570.1 7 Oryza sativa 1E-125 285 69 76 0 (0) _
Os03g16570.3 7 Oryza sativa 1E-98 237 67 75 0 (0) S
GRMZM2G337425_P01 3.21 Zea mays 4E-129 285 66 76 0 (0) _
Zm00001eb012200_P003 agpv5 Zea mays 4E-129 285 66 76 0 (0) _
Zm00001eb012200_P002 agpv5 Zea mays 4E-129 285 66 76 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	FANCL_C(1) PHD(1) Prok-RING_4(1) zf-ANAPC11(1) zf-C3HC4(1) zf-C3HC4_2(1) zf-C3HC
TargetP:	Cytoplasm (Class 4 C0.023; M0.397; S0.017; _0.667)
Predotar:
Subcel. Location:
TM-HMM prediction:	2 TMs
Aramemnon:	2 TMs
TAT position:
Length	273 aa (-cTP 248)
Molecular Weight	30.18 kDA(-cTP )
PI	5.34(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data