PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT3G55460.1 SC35-like splicing factor 30

Lab Annot.

SCL30 (SC35-like splicing factor 30); RNA binding
Mapman: 27.1.1 RNA.processing.splicing

Curated Location

nucleus (Pubmed: 15133128 )

TAIR curated location: nuclear speck15133128

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G13570.1 11 Arabidopsis thaliana 5E-38 137 54 66 5 (4) C
AT1G55310.5 11 Arabidopsis thaliana 6E-35 132 53 66 0 (0) C
AT1G55310.2 11 Arabidopsis thaliana 6E-35 132 53 66 0 (0) C
Os12g38430.1 7 Oryza sativa 3E-57 225 59 63 0 (0) M
Os02g15310.1 7 Oryza sativa 1E-54 188 67 72 0 (0) M
Os11g47830.2 7 Oryza sativa 7E-32 136 45 63 0 (0) C
Zm00001eb029330_P001 agpv5 Zea mays 4E-54 281 53 58 0 (0) M
Zm00001eb029330_P003 agpv5 Zea mays 3E-53 283 52 57 0 (0) M
Zm00001eb164590_P004 agpv5 Zea mays 3E-48 234 55 62 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	PHM7_cyt(1) RRM_1(1) RRM_occluded(1)
TargetP:	Mitochondria (Class 4 C0.185; M0.556; S0.003; _0.263)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	262 aa (-cTP 233)
Molecular Weight	29.57 kDA(-cTP )
PI	11.27(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1431	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	wild-type (rep. 2)
1545	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	wt
2237	Detail								seedlings [A. thaliana]	total tissue	gfs9
2238	Detail								seedlings [A. thaliana]	total tissue	gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

16807317(Phosphoproteins)
18463617(suspension cells-phosphorylated proteins)
19245862(nuclear phosphoproteins (seedlings & cell culture))
19525416(leaf (wt and clpr4-1 mutant))
19253305(phosphoproteins (etiolated seedling))
19376835(leaf phosphoproteins)
20706207(contaminants cell cycle interactome (cell culture))
20166762(guard cells (Arabidopsis))
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data