PPDB

 The Plant Proteome Database

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AT3G55200.1   Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
Lab Annot. splicing factor, putative
Mapman: 27.1.1 RNA.processing.splicing
Curated Location not plastid
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G55220.1 11Arabidopsis thaliana0121410010085 (34)S
AT3G55200.3 11Arabidopsis thaliana012141001000 (0)S
AT3G55200.2 11Arabidopsis thaliana012141001000 (0)S
Os02g04480.1 7Oryza sativa0845829133 (33)_
Os05g51480.1 7Oryza sativa4E-591247224140 (40)_
Os05g51480.2 7Oryza sativa3E-531040234239 (39)_
Zm00001eb231820_P001 agpv5Zea mays0122979900 (0)M
v1_GRMZM2G096972_P01 4a53Zea mays01229799057 (57)M
GRMZM2G096972_P01 3.21Zea mays01229799062 (36)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: CPSF_A(4) MMS1_N(2)
TargetP: Secreted (Class 5 C0.105; M0.155; S0.367; _0.224)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 1214 aa (-cTP 1199)
Molecular Weight 134.97 kDA(-cTP )
PI 5.33(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1507Detail        [A. thaliana] wild-type
1531Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP wild-type (rep. 1)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1619Detail        [A. thaliana] m48
1620Detail        [A. thaliana] m48
1621Detail        [A. thaliana] m48
1651Detail       leaf [A. thaliana] plastoglobules plastoglobulewild-type
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2182Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2183Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2184Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2185Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2216Detail       leaf [A. thaliana] total leaf tissue Clp P5 st
2252Detail       seedlings [A. thaliana] total tissue gfs9
2287Detail        [A. thaliana] Clp C1 WT
2297Detail        [A. thaliana] Clp C1 WT
2298Detail        [A. thaliana] Clp C1 WT
2299Detail        [A. thaliana] Clp C1 TRAP
2300Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP
2303Detail        [A. thaliana] Clp C1 WT
2304Detail        [A. thaliana] Clp C1 WT
2306Detail        [A. thaliana] Clp C1 TRAP
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6
2400Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

 15028209(Total chloroplast)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data

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