PPDB

 The Plant Proteome Database

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AT3G55140.1   Pectin lyase-like superfamily protein
Lab Annot.
Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G55140.2 11Arabidopsis thaliana029199990 (0)_
AT3G09540.1 11Arabidopsis thaliana2E-16532668800 (0)C
AT3G09540.3 11Arabidopsis thaliana1E-16132668800 (0)C
Os01g36620.1 7Oryza sativa1E-16432268800 (0)C
Os01g62000.1 7Oryza sativa5E-13632958710 (0)_
Os06g05260.1 7Oryza sativa1E-4828738520 (0)S
v1_GRMZM2G005562_P03 4a53Zea mays8E-16932570790 (0)C
v1_GRMZM2G005562_P01 4a53Zea mays8E-16932570790 (0)C
v1_GRMZM2G005562_P04 4a53Zea mays8E-16932570790 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Beta_helix(2) Pectate_lyase_4(1)
TargetP: Cytoplasm (Class 3 C0.061; M0.165; S0.129; _0.662)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 331 aa (-cTP 317)
Molecular Weight 37.19 kDA(-cTP )
PI 7.16(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

 19200160(flower-stage 12)
19114538(guard cells Arabidopsis leaf)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help