PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G55070.1   LisH/CRA/RING-U-box domains-containing protein

Lab Annot. LisH/CRA/RING-U-box domains-containing protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G55070.2 11Arabidopsis thaliana03231001004 (2)C
AT4G37880.1 11Arabidopsis thaliana2E-2626826480 (0)_
AT2G22690.2 11Arabidopsis thaliana1E-2026325460 (0)_
Os05g06760.1 7Oryza sativa039064770 (0)C
Os05g06760.2 7Oryza sativa7E-16435763760 (0)C
Os06g38940.1 7Oryza sativa1E-2626924485 (5)_
GRMZM2G177026_P01 3.21Zea mays1E-17238763780 (0)C
Zm00001eb282460_P001 agpv5Zea mays1E-17238763780 (0)C
v1_GRMZM2G177026_P01 4a53Zea mays1E-17238763780 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: CLTH(1) U-box(2) zf-RING_UBOX(1)
TargetP: Chloroplast (Class 4 C0.813; M0.023; S0.033; _0.581)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 418 aa (-cTP 389)
Molecular Weight 47.84 kDA(-cTP 44.92)
PI 8.40(-cTP 8.84)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2289Detail        [A. thaliana] Clp C1 TRAP
2300Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help