PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G54960.2   PDI-like 1-3
Lab Annot. thioredoxin domain (ATPDIL1-3)
Mapman: 21.1 redox.thioredoxin
Curated Location plastid (Pubmed: 23198870 19995733 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G54960.1 11Arabidopsis thaliana0506100100121 (52)S
AT5G60640.1 11Arabidopsis thaliana04166279356 (212)S
AT5G60640.2 11Arabidopsis thaliana04166279303 (175)S
Os02g01010.1 7Oryza sativa0433607619 (19)S
Os06g06790.1 7Oryza sativa2E-63412315122 (22)S
Os11g09280.1 7Oryza sativa7E-60417335146 (46)S
Zm00001eb229180_P001 agpv5Zea mays2E-17941860750 (0)S
v1_GRMZM2G033829_P01 4a53Zea mays2E-17941860754 (4)S
GRMZM2G033829_P01 3.21Zea mays2E-17941860755 (3)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: AhpC-TSA(2) GRP(1) HyaE(2) OST3_OST6(3) Thioredoxin(4) Thioredoxin_2(2) Thioredo
TargetP: Secreted (Class 1 C0.066; M0.008; S0.996; _0.008)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 518 aa (-cTP 494)
Molecular Weight 57.69 kDA(-cTP )
PI 4.82(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1392Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1397Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1447Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 3)
1542Detail       leaf [A. thaliana] wild-type
1651Detail       leaf [A. thaliana] plastoglobules plastoglobulewild-type
1828Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Fluctuating light
2003Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2004Detail       leaf [A. thaliana] WT PG plastoglobuleWT
2008Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2013Detail       leaf [A. thaliana] total leaf tissue wt
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5

* For details about the exprimental sources click here.

Published Proteomics Data

 17151019(vacuole - suspension cell)
19200160(flower-stage 12)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
17216043(leaf)
19334764(plasma membrane (cell culture))
19114538(guard cells Arabidopsis leaf)
21173025(root proteome)
20813957(SUMO proteome)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help