PPDB

 The Plant Proteome Database

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AT3G54920.1   Pectin lyase-like superfamily protein
Lab Annot.
Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases
Curated Location
TAIR curated location: anchored to membrane12068095,12805588
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G04310.1 11Arabidopsis thaliana050759720 (0)M
AT5G04310.2 11Arabidopsis thaliana050759720 (0)M
AT5G04310.3 11Arabidopsis thaliana042565770 (0)M
Os10g31910.1 7Oryza sativa039461750 (0)S
Os04g05050.1 7Oryza sativa3E-16639459720 (0)S
Os04g05050.2 7Oryza sativa5E-16637861740 (0)_
Zm00001eb046690_P002 agpv5Zea mays039162750 (0)S
v1_GRMZM2G472060_P01 4a53Zea mays039961750 (0)S
GRMZM2G472060_P01 3.21Zea mays039961750 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Beta_helix(1) Pectate_lyase_4(1)
TargetP: Secreted (Class 4 C0.104; M0.010; S0.500; _0.003)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 501 aa (-cTP 414)
Molecular Weight 53.93 kDA(-cTP )
PI 5.99(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help