PPDB

PPDB	The Plant Proteome Database

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AT3G54840.1 Ras-related small GTP-binding family protein

Lab Annot.

Rab GTPase (ARA6)
Mapman: 30.5 signalling.G-proteins

Curated Location

ER (Pubmed: 16621602 15743878 15659621 15546360 12932321 11532937 )

TAIR curated location: external side of endosome membrane & early endosome11532937

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G54840.2 11 Arabidopsis thaliana 3E-140 189 100 100 14 (8) _
AT3G54840.3 11 Arabidopsis thaliana 3E-123 167 100 100 0 (0) M
AT4G19640.1 11 Arabidopsis thaliana 2E-72 172 58 78 42 (36) S
Os10g30520.1 7 Oryza sativa 2E-118 201 79 87 0 (0) C
Os03g05740.1 7 Oryza sativa 8E-117 201 78 87 4 (4) _
Os12g43550.2 7 Oryza sativa 1E-71 161 62 78 3 (3) _
v1_GRMZM2G362088_P02 4a53 Zea mays 6E-116 201 78 87 3 (3) C
GRMZM2G362088_P02 3.21 Zea mays 6E-116 201 78 87 11 (7) C
Zm00001eb403120_P001 agpv5 Zea mays 6E-116 201 78 87 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AAA_16(1) AAA_7(1) Arf(1) ATPase(2) FeoB_N(1) GTP_EFTU(1) Gtr1_RagA(1) MMR_HSR1(
TargetP:	Cytoplasm (Class 5 C0.595; M0.041; S0.037; _0.667)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	202 aa (-cTP 147)
Molecular Weight	21.89 kDA(-cTP )
PI	6.16(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
325	Detail								BY2 cell suspension [Tobacco]	cell wall enriched	wild-type
351	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
1401	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1403	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1409	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.1	wild-type
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1442	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 1)
1444	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 3)
1449	Detail								leaf [A. thaliana]	total tissue (3 day HL)	abck2xabck3 (rep. 2)
1534	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	clps (rep. 1)
2010	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2014	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2019	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2

* For details about the exprimental sources click here.

Published Proteomics Data

16618929(UNKNOWN-LOPIT-callus)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21173025(root proteome)
21988472(vacuole (unfiltered data))

Comparative Proteomics Data