PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G54770.1   RNA-binding (RRM/RBD/RNP motifs) family protein

Lab Annot.
Mapman: 27.4 RNA.RNA binding
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G54770.3 11Arabidopsis thaliana025797970 (0)_
AT3G54770.2 11Arabidopsis thaliana2E-15922995951 (1)_
AT1G76460.1 11Arabidopsis thaliana2E-4012157671 (1)_
Os03g17760.1 7Oryza sativa8E-5226843530 (0)_
Os01g65550.1 7Oryza sativa2E-3910563764 (4)_
Os01g65550.2 7Oryza sativa3E-3910563764 (4)_
v1_GRMZM2G145562_P01 4a53Zea mays3E-5325446552 (2)_
GRMZM2G145562_P01 3.21Zea mays3E-5325446552 (2)_
v1_GRMZM2G141386_P01 4a53Zea mays1E-4619247572 (2)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Nup35_RRM_2(1) RRM_1(1) RRM_7(1)
TargetP: Cytoplasm (Class 1 C0.023; M0.076; S0.059; _0.973)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 261 aa (-cTP 240)
Molecular Weight 28.86 kDA(-cTP )
PI 9.57(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1213Detail       leaf [A. thaliana] total leaf tissue P3-StrepII complemented

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help