PPDB

 The Plant Proteome Database

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AT3G54670.3   Structural maintenance of chromosomes (SMC) family protein

Lab Annot.
Mapman:
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.10)
Links POGS   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G54670.1 11Arabidopsis thaliana01239989814 (3)_
AT3G54670.2 10Arabidopsis thaliana04531001000 (0)_
AT5G48600.1 11Arabidopsis thaliana3E-79133525472 (1)_
Os12g44390.1 7Oryza sativa055756762 (2)_
Os05g41750.1 7Oryza sativa3E-3438825502 (2)_
Os02g04050.1 7Oryza sativa6E-2174323430 (0)_
Zm00001eb038490_P001 agpv5Zea mays0123560760 (0)_
GRMZM2G416069_P02 3.21Zea mays053060783 (1)_
v1_GRMZM2G416069_P03 4a53Zea mays2E-166433587519 (19)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: ABC_tran(1) Apolipoprotein(1) Cast(1) DivIVA(1) DUF904(1) EzrA(1) FlaC_arch(1) H
TargetP: Cytoplasm (Class 3 C0.132; M0.129; S0.199; _0.763)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 1239 aa (-cTP 1175)
Molecular Weight 143.41 kDA(-cTP )
PI 7.77(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1532Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP clps (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

 21166475(cytosolic-fractions-crude)
21607647(SUMOylated proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help