PPDB

The Plant Proteome Database

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AT3G54490.1   RNA polymerase II fifth largest subunit%2C E

Lab Annot.
Mapman: 27.2 RNA.transcription
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G57080.1 11Arabidopsis thaliana7E-6620947680 (0)_
AT2G41340.1 11Arabidopsis thaliana2E-6121046670 (0)_
AT2G41340.3 11Arabidopsis thaliana1E-4417044680 (0)_
Os11g04730.1 7Oryza sativa4E-6121046650 (0)_
Os12g04510.1 7Oryza sativa5E-6121046650 (0)C
Os01g59140.1 7Oryza sativa5E-3219835550 (0)_
Zm00001eb093130_P001 agpv5Zea mays3E-5821146640 (0)_
GRMZM2G162697_P02 3.21Zea mays3E-5821146640 (0)_
v1_GRMZM2G476009_P01 4a53Zea mays2E-32198345620 (20)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF1473(1) RNA_pol_Rpb5_C(1) RNA_pol_Rpb5_N(1)
TargetP: Cytoplasm (Class 1 C0.107; M0.057; S0.042; _0.941)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 233 aa (-cTP 168)
Molecular Weight 26.89 kDA(-cTP )
PI 6.26(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help