PPDB

The Plant Proteome Database

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AT3G54420.1   homolog of carrot EP3-3 chitinase

Lab Annot. homolog of carrot EP3-3 chitinase
Mapman: 20.1 stress.biotic
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G43590.1 11Arabidopsis thaliana1E-110252597355 (13)S
AT2G43580.1 11Arabidopsis thaliana4E-10425356711 (0)S
AT2G43570.1 11Arabidopsis thaliana2E-86274486442 (7)S
Os04g41680.1 7Oryza sativa5E-11726062710 (0)S
Os02g39330.1 7Oryza sativa1E-11624765740 (0)S
Os04g41620.1 7Oryza sativa3E-10220767763 (3)S
v1_GRMZM2G129189_P01 4a53Zea mays2E-11224763738 (8)S
Zm00001eb246640_P001 agpv5Zea mays2E-11224763730 (0)S
GRMZM2G129189_P01 3.21Zea mays2E-11224763733 (3)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Chitin_bind_1(2) Glyco_hydro_19(2)
TargetP: Secreted (Class 1 C0.023; M0.014; S0.968; _0.037)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 273 aa (-cTP 255)
Molecular Weight 29.44 kDA(-cTP )
PI 5.05(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1348Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 1)
1349Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 2)

* For details about the exprimental sources click here.

Published Proteomics Data

14595688(Cell Wall proteome)
18716313(secreted proteins (cell culture))
WallDB-E.Jamet(cell wall reference proteome)
21533090(plasmodesmata-crude)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help