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PPDB	The Plant Proteome Database

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AT3G53920.1 RNApolymerase sigma-subunit C

Lab Annot.

SIG3 sigma factor (SigC)
Mapman: 27.2 RNA.transcription

Curated Location

plastid (Pubmed: 23198870 18431481 )

TAIR curated location: chloroplast9405719

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G53920.2 11 Arabidopsis thaliana 0 410 100 100 0 (0) C
AT1G08540.1 11 Arabidopsis thaliana 2E-62 294 36 65 0 (0) C
AT2G36990.1 11 Arabidopsis thaliana 3E-44 294 28 58 0 (0) C
Os05g51150.3 7 Oryza sativa 5E-86 447 36 59 0 (0) _
Os05g51150.1 7 Oryza sativa 1E-84 447 36 59 0 (0) C
Os03g16430.2 7 Oryza sativa 2E-56 296 35 60 0 (0) C
Zm00001eb297490_P001 agpv5 Zea mays 2E-63 442 36 54 0 (0) M
Zm00001eb297490_P003 agpv5 Zea mays 4E-63 442 36 54 0 (0) C
GRMZM5G830932_P01 3.21 Zea mays 4E-63 442 36 54 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	GPW_gp25(1) HTH_31(1) Sigma70_r2(2) Sigma70_r3(2) Sigma70_r4(1) Sigma70_r4_2(3)
TargetP:	Chloroplast (Class 1 C0.977; M0.046; S0.008; _0.031)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	571 aa (-cTP 539)
Molecular Weight	64.91 kDA(-cTP 61.51)
PI	9.85(-cTP 9.75)

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

19995723(chloroplast reference proteome)

Comparative Proteomics Data