PPDB

 The Plant Proteome Database

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AT3G53890.1   Ribosomal protein S21e
Lab Annot. Ribosomal protein S21e
Mapman: 29.2.1.2.1.21 protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S21
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G53890.2 11Arabidopsis thaliana5E-588210010099 (26)_
AT5G27700.1 11Arabidopsis thaliana8E-5581959892 (31)_
Os03g46490.1 7Oryza sativa2E-4482738929 (29)_
Os03g22460.2 7Oryza sativa3E-3161739125 (25)_
v1_GRMZM2G125300_P03 4a53Zea mays3E-4581779063 (62)_
GRMZM2G125300_P03 3.21Zea mays3E-4581779073 (70)_
v1_GRMZM2G134109_P01 4a53Zea mays3E-4581778863 (62)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: FAM165(1) Ribosomal_S21e(1)
TargetP: Cytoplasm (Class 2 C0.123; M0.224; S0.054; _0.835)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 82 aa (-cTP 23)
Molecular Weight 9.07 kDA(-cTP )
PI 7.80(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1394Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1397Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1398Detail       leaf [A. thaliana] total leaf tissue 1.14 Prep1_Prep2
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1420Detail        [A. thaliana]  
1427Detail        [A. thaliana] total leaf tissue 1.11 wild-type
1428Detail        [A. thaliana] total leaf tissue 1.11 Prep1_Prep2_t1_t2
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1874Detail       Total leaf [A. thaliana] total soluble wild-type
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2284Detail        [A. thaliana] Clp C1 WT
2285Detail        [A. thaliana] Clp C1 TRAP
2297Detail        [A. thaliana] Clp C1 WT
2398Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/35SRecA-GFP
2399Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1WTSTREP
2400Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

 15734919(80S cytolic ribosomes)
17934214(cytosolic ribosome)
19114538(guard cells Arabidopsis leaf)
21325567(root-proteome (wt & det3))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help