PPDB

 The Plant Proteome Database

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AT3G53780.2   RHOMBOID-like protein 4
Lab Annot. rhomboid protease 4 (AtRBL4) - likely in PM
Mapman: 29.5.5.10* protein.degradation.serine protease ST.S54
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G53780.3 11Arabidopsis thaliana03121001000 (0)_
AT3G53780.1 11Arabidopsis thaliana02701001000 (0)_
AT2G29050.1 11Arabidopsis thaliana3E-15734160760 (0)_
Os11g47840.1 7Oryza sativa3E-14934457740 (0)_
Os09g35730.1 7Oryza sativa3E-135294627849 (49)_
Os03g02530.1 7Oryza sativa3E-12829358770 (0)_
Zm00001eb124440_P002 agpv5Zea mays3E-14841152670 (0)_
Zm00001eb124440_P001 agpv5Zea mays3E-14841152670 (0)_
Zm00001eb124440_P003 agpv5Zea mays3E-14841152670 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Rhomboid(3)
TargetP: Cytoplasm (Class 3 C0.356; M0.068; S0.004; _0.767)
Predotar:
Subcel. Location:
TM-HMM prediction: 7 TMs
Aramemnon: 7 TMs
TAT position:
Length 394 aa (-cTP 324)
Molecular Weight 43.51 kDA(-cTP )
PI 9.18(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

 17317660(Plasma Membrane proteome)
21533090(plasmodesmata-crude)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help