PPDB

 The Plant Proteome Database

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AT3G53700.1   Pentatricopeptide repeat (PPR) superfamily protein
Lab Annot. pentatricopeptide repeat (PPR) protein
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein
Curated Location plastid (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G64320.1 11Arabidopsis thaliana2E-10067229480 (0)M
AT3G09060.1 11Arabidopsis thaliana7E-9964029500 (0)_
AT3G09060.2 11Arabidopsis thaliana7E-9964029500 (0)_
Os03g40020.1 7Oryza sativa071853756 (6)C
Os07g01130.1 7Oryza sativa3E-9457230520 (0)C
Os01g57410.2 7Oryza sativa5E-9365628510 (0)C
Zm00001eb043060_P002 agpv5Zea mays070854752 (2)C
Zm00001eb043060_P001 agpv5Zea mays070854752 (2)C
v1_GRMZM2G150030_P01 4a53Zea mays0708547572 (72)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: ATP13(6) Clathrin(3) Death(2) DUF1128(1) DUF2492(2) DUF3368(2) MeMO_Hyd_G(2) Mic
TargetP: Chloroplast (Class 2 C0.811; M0.055; S0.110; _0.015)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 754 aa (-cTP 682) (-lTP 668)
Molecular Weight 84.55 kDA(-cTP 76.79)(-lTP 75.26)
PI 5.26(-cTP 5.16)(-lTP 5.121)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
543Detail       leaf [A. thaliana] stroma (FPLC) >600 kDa (HMA) wild-type
640Detail       leaf [A. thaliana] plastid nucleoid wild-type
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1179Detail       leaf [A. thaliana] co-IP ClpR2 stromaclpr2-1
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1421Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1422Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1485Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 3)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1531Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP wild-type (rep. 1)
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2112Detail       leaf [A. thaliana] Stroma stromawt
2114Detail       leaf [A. thaliana] Stroma stromawt
2291Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2306Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))
20423899(chloroplast)

Comparative Proteomics Data

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