PPDB

 The Plant Proteome Database

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AT3G53610.1   RAB GTPase homolog 8
Lab Annot. Ras-related GTP-binding protein ARA-3
Mapman: 30.5 signalling.G-proteins
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G53610.2 11Arabidopsis thaliana4E-16121610010036 (35)_
AT3G53610.3 11Arabidopsis thaliana4E-16121610010031 (30)_
AT5G59840.1 11Arabidopsis thaliana1E-145206959865 (63)_
Os07g13530.1 7Oryza sativa7E-134206889438 (38)_
Os05g38630.1 7Oryza sativa8E-133207889538 (38)_
Os05g38630.2 7Oryza sativa8E-133207889538 (38)_
v1_GRMZM2G130404_P03 4a53Zea mays8E-135206889578 (76)_
Zm00001eb289730_P001 agpv5Zea mays8E-13520688950 (0)_
Zm00001eb289730_P004 agpv5Zea mays8E-13520688950 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: AAA(2) AAA_16(1) AAA_22(1) AAA_29(1) AAA_5(1) Arf(1) DUF3963(1) GTP_EFTU(1) Gtr1
TargetP: Cytoplasm (Class 5 C0.025; M0.311; S0.448; _0.510)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 216 aa (-cTP 211)
Molecular Weight 23.94 kDA(-cTP )
PI 8.36(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
325Detail       BY2 cell suspension [Tobacco] cell wall enriched wild-type
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1018Detail        [aphid]  
1345Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 1)
1346Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 2)
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1348Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 1)
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1530Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP wild-type (rep. 1)
1531Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP wild-type (rep. 1)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1614Detail       Natural Senescence leaf [A. thaliana]  
1617Detail        [A. thaliana] m48
1641Detail       leaf [A. thaliana] total tissue shoot1 mutant
1707Detail        [A. thaliana] sht1
1829Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Fluctuating light
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2030Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2249Detail       seedlings [A. thaliana] total tissue gfs9
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

 15060130(Plasma Membrane proteome)
17317660(Plasma Membrane proteome)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
21826108(SYP trans-Golgi-filtered)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help