PPDB

 The Plant Proteome Database

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AT3G53540.1   afadin
Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G53540.2 11Arabidopsis thaliana09001001000 (0)S
AT4G28760.1 11Arabidopsis thaliana7E-3847233480 (0)_
AT4G28760.2 11Arabidopsis thaliana7E-3847233480 (0)_
Os05g02580.1 7Oryza sativa3E-3895626420 (0)C
Os03g17210.2 7Oryza sativa7E-3451828470 (0)_
Os03g17210.1 7Oryza sativa1E-3351828470 (0)C
Zm00001eb077920_P005 agpv5Zea mays4E-3745934460 (0)_
Zm00001eb077920_P004 agpv5Zea mays5E-3745934470 (0)_
Zm00001eb077920_P002 agpv5Zea mays6E-3745934470 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF3741(2) DUF4378(2) VARLMGL(1)
TargetP: Mitochondria (Class 4 C0.431; M0.644; S0.002; _0.107)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 924 aa (-cTP 877)
Molecular Weight 103.27 kDA(-cTP )
PI 7.65(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1180Detail       leaf [A. thaliana] co-IP OEC23 stromaclpr2-1
1365Detail        [A. thaliana] chloroplast fractionation  
1388Detail        [A. thaliana] chloroplast fractionation  
1467Detail       leaf [A. thaliana] co-IP GST-ClpS stroma clpc1 x clps (rep. 2)
1468Detail       leaf [A. thaliana] co-IP GST stroma clpc1 x clps (rep. 2)
1481Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 1)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1485Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 3)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1688Detail        [A. thaliana] Col-0
1691Detail        [A. thaliana] uvr

* For details about the exprimental sources click here.

Published Proteomics Data

 17317660(Plasma Membrane proteome)
17660356(tonoplast (Brassica oleracea buds))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help