PPDB

PPDB	The Plant Proteome Database

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AT3G53500.2 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein

Lab Annot.

RSZ32; nucleic acid binding
Mapman: 35.1 not assigned.no ontology

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G53500.1 11 Arabidopsis thaliana 6E-170 243 100 100 2 (2) _
AT3G53500.3 11 Arabidopsis thaliana 6E-170 243 100 100 0 (0) _
AT2G37340.1 11 Arabidopsis thaliana 3E-106 299 68 75 5 (5) M
Os03g17710.2 7 Oryza sativa 2E-81 159 76 86 0 (0) M
Os03g17710.1 7 Oryza sativa 1E-79 164 73 82 0 (0) M
Os05g02880.1 7 Oryza sativa 2E-79 143 79 90 0 (0) M
Zm00001eb355350_P002 agpv5 Zea mays 8E-81 143 81 89 0 (0) M
v1_GRMZM2G175419_P01 4a53 Zea mays 1E-80 143 81 89 10 (10) M
GRMZM2G175419_P01 3.21 Zea mays 1E-80 143 81 89 2 (2) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	CLIP1_ZNF(1) RRM_1(1) RRM_5(1) RRM_occluded(1) zf-CCHC(2) zf-CCHC_2(2) zf-CCHC_3
TargetP:	Mitochondria (Class 3 C0.029; M0.869; S0.008; _0.446)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	284 aa (-cTP 265)
Molecular Weight	31.82 kDA(-cTP )
PI	10.24(-cTP )

Experimental Evidence

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View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)

* For details about the exprimental sources click here.

Published Proteomics Data

16807317(Phosphoproteins)
18463617(suspension cells-phosphorylated proteins)
19245862(nuclear phosphoproteins (seedlings & cell culture))
19525416(leaf (wt and clpr4-1 mutant))
19376835(leaf phosphoproteins)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data