PPDB

PPDB	The Plant Proteome Database

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AT3G53500.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein

Lab Annot.

RSZ32; nucleic acid binding
Mapman: 35.1 not assigned.no ontology

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G53500.3 11 Arabidopsis thaliana 1E-170 243 100 100 0 (0) _
AT3G53500.2 11 Arabidopsis thaliana 5E-170 243 100 100 2 (2) M
AT2G37340.5 11 Arabidopsis thaliana 4E-76 258 63 71 0 (0) _
Os03g17710.2 7 Oryza sativa 9E-56 118 74 83 0 (0) M
Os03g17710.1 7 Oryza sativa 7E-54 123 71 79 0 (0) M
Os05g02880.1 7 Oryza sativa 2E-53 114 73 84 0 (0) M
Zm00001eb355350_P003 agpv5 Zea mays 2E-55 102 81 88 0 (0) M
Zm00001eb355350_P002 agpv5 Zea mays 3E-55 102 81 88 0 (0) M
v1_GRMZM2G175419_P04 4a53 Zea mays 3E-55 102 81 88 1 (1) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	CLIP1_ZNF(1) RRM_1(1) zf-CCHC(2) zf-CCHC_2(2) zf-CCHC_3(2) zf-CCHC_4(2) zf-CCHC_
TargetP:	Cytoplasm (Class 2 C0.075; M0.173; S0.042; _0.891)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	243 aa (-cTP 207)
Molecular Weight	26.77 kDA(-cTP )
PI	10.08(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)

* For details about the exprimental sources click here.

Published Proteomics Data

16807317(Phosphoproteins)
18463617(suspension cells-phosphorylated proteins)
19245862(nuclear phosphoproteins (seedlings & cell culture))
19525416(leaf (wt and clpr4-1 mutant))
19376835(leaf phosphoproteins)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data