PPDB

PPDB	The Plant Proteome Database

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AT3G53260.1 phenylalanine ammonia-lyase 2

Lab Annot.

Mapman: 16.2.1.1 secondary metabolism.phenylpropanoids.lignin biosynthesis.PAL

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT2G37040.1 11 Arabidopsis thaliana 0 714 90 95 16 (6) _
AT3G10340.1 11 Arabidopsis thaliana 0 698 80 89 1 (1) _
AT5G04230.1 11 Arabidopsis thaliana 0 697 72 83 22 (15) _
Os04g43800.1 7 Oryza sativa 0 696 76 86 0 (0) _
Os02g41650.3 7 Oryza sativa 0 700 76 86 26 (26) _
Os02g41650.1 7 Oryza sativa 0 700 76 86 26 (26) _
Zm00001eb077220_P001 agpv5 Zea mays 0 693 77 86 0 (0) _
v1_GRMZM2G118345_P01 4a53 Zea mays 0 693 77 86 7 (7) _
GRMZM2G118345_P01 3.21 Zea mays 0 693 77 86 7 (6) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Lyase_aromatic(1) NLRC4_HD2(1)
TargetP:	Cytoplasm (Class 1 C0.060; M0.086; S0.084; _0.933)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	717 aa (-cTP 712)
Molecular Weight	77.86 kDA(-cTP )
PI	6.04(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
2250	Detail								seedlings [A. thaliana]	total tissue	atg5

* For details about the exprimental sources click here.

Published Proteomics Data

20118269(developing seeds)
20405473(roots - TRX-y interacting proteins)
19292762(Ubiquitin-affinity seedling (10 d))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data