PPDB

The Plant Proteome Database

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AT3G53260.1   phenylalanine ammonia-lyase 2

Lab Annot.
Mapman: 16.2.1.1 secondary metabolism.phenylpropanoids.lignin biosynthesis.PAL
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G37040.1 11Arabidopsis thaliana0714909513 (6)_
AT3G10340.1 11Arabidopsis thaliana069880891 (1)_
AT5G04230.1 11Arabidopsis thaliana0697728320 (15)_
Os04g43800.1 7Oryza sativa069676860 (0)_
Os02g41650.3 7Oryza sativa0700768626 (26)_
Os02g41650.1 7Oryza sativa0700768626 (26)_
Zm00001eb077220_P001 agpv5Zea mays069377860 (0)_
v1_GRMZM2G118345_P01 4a53Zea mays069377867 (7)_
GRMZM2G118345_P01 3.21Zea mays069377866 (6)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Lyase_aromatic(1) NLRC4_HD2(1)
TargetP: Cytoplasm (Class 1 C0.060; M0.086; S0.084; _0.933)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 717 aa (-cTP 712)
Molecular Weight 77.86 kDA(-cTP )
PI 6.04(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2250Detail       seedlings [A. thaliana] total tissue atg5

* For details about the exprimental sources click here.

Published Proteomics Data

20118269(developing seeds)
20405473(roots - TRX-y interacting proteins)
19292762(Ubiquitin-affinity seedling (10 d))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help