PPDB

PPDB	The Plant Proteome Database

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AT3G53190.1 Pectin lyase-like superfamily protein

Lab Annot.

Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

TAIR curated location: anchored to membrane12068095,12805588

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G04310.3 11 Arabidopsis thaliana 0 419 64 75 0 (0) M
AT5G04310.1 11 Arabidopsis thaliana 0 429 63 74 0 (0) M
AT5G04310.2 11 Arabidopsis thaliana 0 429 63 74 0 (0) M
Os10g31910.1 7 Oryza sativa 0 388 67 79 0 (0) S
Os04g05050.1 7 Oryza sativa 0 382 67 77 0 (0) S
Os04g05050.2 7 Oryza sativa 0 355 70 80 0 (0) _
Zm00001eb046690_P003 agpv5 Zea mays 0 348 69 83 0 (0) _
GRMZM2G412207_P04 3.21 Zea mays 0 378 67 78 0 (0) C
Zm00001eb420010_P001 agpv5 Zea mays 0 378 67 78 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Beta_helix(2) NosD(1) Pectate_lyase_4(2)
TargetP:	Secreted (Class 1 C0.013; M0.092; S0.947; _0.004)
Predotar:
Subcel. Location:
TM-HMM prediction:	2 TMs
Aramemnon:	1 TMs
TAT position:
Length	483 aa (-cTP 465)
Molecular Weight	53.59 kDA(-cTP )
PI	6.00(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data