PPDB

The Plant Proteome Database

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AT3G52950.1   CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein

Lab Annot. CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G52950.2 11Arabidopsis thaliana05561001003 (2)C
AT2G36500.1 11Arabidopsis thaliana053675830 (0)C
AT5G50530.1 11Arabidopsis thaliana046757751 (1)C
Os12g07190.1 7Oryza sativa0565617619 (19)C
Os11g06930.1 7Oryza sativa056557720 (0)C
Os01g73040.1 7Oryza sativa054258760 (0)C
GRMZM2G126656_P01 3.21Zea mays053962790 (0)C
v1_GRMZM2G126656_P01 4a53Zea mays053962790 (0)C
Zm00001eb028380_P003 agpv5Zea mays053962790 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: CBS(5) DUF512(2) PB1(1) Regnase_1_C(2)
TargetP: Chloroplast (Class 2 C0.863; M0.129; S0.006; _0.069)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 1 TMs
Aramemnon: 1 TMs
TAT position:
Length 556 aa (-cTP 470)
Molecular Weight 60.03 kDA(-cTP 51.03)
PI 7.13(-cTP 5.60)

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1544Detail       leaf [A. thaliana] TiO2 thylakoid membranek1xk3
1547Detail       leaf [A. thaliana] TiO2 thylakoid membranek1k3

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
19334764(plasma membrane (cell culture))
19376835(leaf phosphoproteins)
21841088(mitochondria (2DE native gel))
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help