PPDB

 The Plant Proteome Database

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AT3G52560.4   ubiquitin E2 variant 1D-4
Lab Annot. ubiquitin-protein ligase (similar to MMZ4/UEV1D)
Mapman: 29.5.11.3 protein.degradation.ubiquitin.E2
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links PeptideAtlas   POGS   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G52560.2 11Arabidopsis thaliana6E-105164898940 (27)_
AT3G52560.1 11Arabidopsis thaliana2E-104164898953 (40)_
AT2G36060.2 11Arabidopsis thaliana4E-96164828536 (27)_
Os09g12570.1 7Oryza sativa5E-92166788215 (15)_
Os12g41220.1 7Oryza sativa3E-85157758218 (18)_
Os04g58800.2 7Oryza sativa1E-8416573810 (0)_
v1_GRMZM2G071010_P01 4a53Zea mays9E-94166798353 (53)_
GRMZM2G071010_P01 3.21Zea mays9E-941667983135 (58)_
v1_GRMZM2G027378_P01 4a53Zea mays9E-94166798353 (53)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: UQ_con(2)
TargetP: Cytoplasm (Class 4 C0.038; M0.376; S0.066; _0.681)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 164 aa (-cTP 161)
Molecular Weight 18.59 kDA(-cTP )
PI 5.95(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1397Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1432Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1532Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP clps (rep. 1)
1566Detail       leaf [A. thaliana] TiO2 thylakoid membranek2k3
1567Detail       leaf [A. thaliana] TiO2 thylakoid membranek2k3
1875Detail       Total leaf [A. thaliana] total soluble wild-type
2013Detail       leaf [A. thaliana] total leaf tissue wt
2017Detail       leaf [A. thaliana] total leaf tissue wild-type
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2030Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

 21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help