PPDB

PPDB	The Plant Proteome Database

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AT3G52470.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family

Lab Annot.

Mapman: 35.1 not assigned.no ontology

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT2G35960.1 11 Arabidopsis thaliana 5E-113 208 80 89 0 (0) _
AT3G11660.1 11 Arabidopsis thaliana 1E-104 208 66 82 1 (1) M
AT4G09590.1 11 Arabidopsis thaliana 4E-100 208 67 78 0 (0) _
Os11g05860.1 7 Oryza sativa 4E-60 214 45 61 4 (4) _
Os12g06260.1 7 Oryza sativa 2E-57 216 41 61 0 (0) _
Os02g33550.1 7 Oryza sativa 8E-49 217 36 60 27 (27) _
Zm00001eb198910_P002 agpv5 Zea mays 7E-57 213 43 62 0 (0) _
Zm00001eb198910_P003 agpv5 Zea mays 7E-57 213 43 62 0 (0) _
Zm00001eb198910_P001 agpv5 Zea mays 7E-57 213 43 62 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	CBM_35(1) DUF4307(1) LEA_2(1) Sarcolipin(1) Sigma_reg_N(1)
TargetP:	Secreted (Class 5 C0.006; M0.126; S0.639; _0.622)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:	1 TMs
TAT position:
Length	208 aa (-cTP 152)
Molecular Weight	23.10 kDA(-cTP )
PI	9.80(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
324	Detail								leaf [A. thaliana]	cell wall enriched	wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

19036721(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
19260003(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
21533090(plasmodesmata-crude)
20843791(DRM-enriched plasmamembrane)

Comparative Proteomics Data