PPDB

 The Plant Proteome Database

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AT3G52170.1   DNA binding protein
Lab Annot. PEND - PD2 - DNA binding - nucleoids (TAC)
Mapman: 28.3* DNA.plastid nucleoid interacting
Curated Location plastid nucleoid (Pubmed: 23198870 18431481 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G52170.2 11Arabidopsis thaliana04991001000 (0)C
AT3G52170.3 11Arabidopsis thaliana049994940 (0)C
AT3G52170.4 11Arabidopsis thaliana049994940 (0)C
Os12g34350.3 7Oryza sativa3E-216764821 (1)_
Os12g34350.1 7Oryza sativa5E-216764822 (2)_
Os12g34350.2 7Oryza sativa5E-216764822 (2)_
Zm00001eb410830_P002 agpv5Zea mays1E-206467810 (0)C
Zm00001eb137780_P004 agpv5Zea mays1E-206467820 (0)C
GRMZM2G171006_P01 3.21Zea mays1E-206467811 (1)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: tRNA_bind(1)
TargetP: Chloroplast (Class 5 C0.458; M0.089; S0.031; _0.391)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 499 aa (-cTP 459)
Molecular Weight 54.03 kDA(-cTP 49.47)
PI 4.83(-cTP 4.60)

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

 19995723(chloroplast reference proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help