PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G52090.1   DNA-directed RNA polymerase%2C RBP11-like protein

Lab Annot. DNA-directed RNA polymerase II subunit (TRPB13.6)
Mapman: 27.2 RNA.transcription
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G52090.2 11Arabidopsis thaliana1E-7714679799 (4)_
AT2G29540.2 11Arabidopsis thaliana1E-098731580 (0)_
AT2G29540.1 11Arabidopsis thaliana1E-098731580 (0)_
Os07g07610.1 7Oryza sativa9E-6411277907 (7)_
Os12g09280.1 7Oryza sativa8E-128332550 (0)_
Zm00001eb247210_P001 agpv5Zea mays2E-6811681910 (0)_
GRMZM2G130207_P10 3.21Zea mays2E-68116819111 (9)_
GRMZM2G130207_P03 3.21Zea mays2E-68116819111 (9)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: RNA_pol_L(1) RNA_pol_L_2(1) Tup_N(1)
TargetP: Cytoplasm (Class 3 C0.172; M0.252; S0.069; _0.792)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 116 aa (-cTP 103)
Molecular Weight 13.56 kDA(-cTP )
PI 6.41(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1651Detail       leaf [A. thaliana] plastoglobules plastoglobulewild-type

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
20706207(cell cycle interactome (cell culture))
21166475(cytosolic-fractions-crude)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help