PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G52070.1   RNA/RNP complex-1-interacting phosphatase

Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G52070.2 11Arabidopsis thaliana6E-821131001002 (2)C
Os03g11780.1 7Oryza sativa1E-105251690 (0)C
Zm00001eb400040_P001 agpv5Zea mays4E-115154660 (0)C
v1_GRMZM2G324478_P01 4a53Zea mays1E-105154660 (0)C
GRMZM2G324478_P01 3.21Zea mays1E-105154660 (0)C

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM:
TargetP: Chloroplast (Class 3 C0.813; M0.386; S0.039; _0.029)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 1 TMs
Aramemnon: 1 TMs
TAT position:
Length 114 aa (-cTP 84)
Molecular Weight 13.24 kDA(-cTP 9.77)
PI 10.12(-cTP 9.83)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

19376835(leaf phosphoproteins)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help