PPDB

PPDB	The Plant Proteome Database

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AT3G51880.1 high mobility group B1

Lab Annot.

transcription factor (HMGB1)
Mapman: 27.3.62 RNA.regulation of transcription.Nucleosome/chromatin assembly factor group

Curated Location

nucleus (Pubmed: 17114349 )

TAIR curated location: chromatin12653554

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G51880.5 11 Arabidopsis thaliana 2E-120 178 100 100 0 (0) _
AT3G51880.3 11 Arabidopsis thaliana 2E-120 178 100 100 19 (19) _
AT3G51880.2 11 Arabidopsis thaliana 1E-117 185 96 96 20 (20) _
Os09g37910.2 6 Oryza sativa 4E-40 115 60 77 2 (2) _
Os09g37910.3 6 Oryza sativa 4E-40 115 60 77 2 (2) _
Os09g37910.1 7 Oryza sativa 3E-38 112 59 76 4 (4) _
GRMZM2G066528_P02 3.21 Zea mays 7E-39 111 62 79 4 (4) _
Zm00001eb320870_P001 agpv5 Zea mays 7E-39 111 62 79 0 (0) _
v1_GRMZM2G066528_P02 4a53 Zea mays 7E-39 111 62 79 4 (4) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	CDC27(1) DNA_pol_phi(1) HMG_box(1) HMG_box_2(1) Nucleo_P87(1) YABBY(2)
TargetP:	Cytoplasm (Class 1 C0.127; M0.054; S0.067; _0.951)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	178 aa (-cTP 176)
Molecular Weight	20.27 kDA(-cTP )
PI	4.91(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
361	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
527	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt1)
1399	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1401	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1403	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1407	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1494	Detail								leaf [A. thaliana]
1612	Detail								Natural Senescence leaf [A. thaliana]	chloroplast fractionation thylakoid membrane
1616	Detail								Natural Senescence leaf [A. thaliana]
1619	Detail								[A. thaliana]		m48
1620	Detail								[A. thaliana]		m48
1621	Detail								[A. thaliana]		m48
1641	Detail								leaf [A. thaliana]	total tissue	shoot1 mutant
2247	Detail								seedlings [A. thaliana]	total tissue	atg5
2249	Detail								seedlings [A. thaliana]	total tissue	gfs9
2324	Detail								leaf [A. thaliana]	THYLAKOIDS thylakoid membrane

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
19245862(nuclear phosphoproteins (seedlings & cell culture))
19525416(leaf (wt and clpr4-1 mutant))
19376835(leaf phosphoproteins)
20166762(guard cells (Arabidopsis))
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
20733066(phosphoproteome-ABA-leaf)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data