PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G51730.1   saposin B domain-containing protein
Lab Annot. saposin B domain-containing protein
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G01800.1 11Arabidopsis thaliana9E-5217047652 (1)S
Os01g07250.1 7Oryza sativa2E-5420743640 (0)S
Os05g26954.1 7Oryza sativa4E-4919839600 (0)C
Os05g26954.2 7Oryza sativa3E-4618041610 (0)C
GRMZM2G015906_P01 3.21Zea mays2E-4620635571 (1)S
Zm00001eb350240_P002 agpv5Zea mays2E-4620635570 (0)S
v1_GRMZM2G015906_P01 4a53Zea mays2E-4620635571 (1)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF1677(2) DUF357(1) DUF5743(2) SapB_1(3) SapB_2(4)
TargetP: Secreted (Class 1 C0.018; M0.043; S0.977; _0.070)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 213 aa (-cTP 188)
Molecular Weight 24.10 kDA(-cTP )
PI 5.00(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1334Detail       leaf [A. thaliana] total tissue - low mass region clpt1xclpt2
1356Detail       leaf [A. thaliana] total tissue - low mass region wild-type
1357Detail       leaf [A. thaliana] total tissue - low mass region clpt1xclpt2
1394Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1406Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1611Detail       leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1612Detail       Natural Senescence leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1614Detail       Natural Senescence leaf [A. thaliana]  
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2021Detail       leaf [A. thaliana] total leaf tissue  
2249Detail       seedlings [A. thaliana] total tissue gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

 15539469(vacuole)
19525416(leaf (wt and clpr4-1 mutant))
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help