PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G51660.1   Tautomerase/MIF superfamily protein
Lab Annot. macrophage migration inhibitory factor protein / MIF protein
Mapman: 35.1 not assigned.no ontology
Curated Location peroxisome (Pubmed: 19329564 21472859 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G01650.4 11Arabidopsis thaliana9E-3411149670 (0)_
AT5G01650.1 11Arabidopsis thaliana4E-331025069188 (151)_
AT5G01650.3 11Arabidopsis thaliana1E-3210250690 (0)_
Os11g01600.2 7Oryza sativa5E-32102506916 (16)_
Os12g01680.1 7Oryza sativa5E-32102506916 (16)_
Os11g01600.1 7Oryza sativa8E-32102506916 (16)_
Zm00001eb195060_P001 agpv5Zea mays1E-3210747700 (0)_
v1_GRMZM2G088847_P07 4a53Zea mays1E-32107477099 (99)_
v1_GRMZM2G088847_P02 4a53Zea mays1E-32107477099 (99)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: HARE-HTH(1) MIF(1) NAR2(2) Tautomerase(2)
TargetP: Cytoplasm (Class 2 C0.080; M0.108; S0.084; _0.889)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 112 aa (-cTP 91)
Molecular Weight 12.21 kDA(-cTP )
PI 8.82(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1356Detail       leaf [A. thaliana] total tissue - low mass region wild-type
1357Detail       leaf [A. thaliana] total tissue - low mass region clpt1xclpt2
1394Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1406Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1440Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 2)
1441Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 3)
1444Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1448Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 1)
1496Detail       leaf [A. thaliana] Prep1_Prep2_t1_t2
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1531Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP wild-type (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1615Detail       Natural Senescence leaf [A. thaliana]  
1651Detail       leaf [A. thaliana] plastoglobules plastoglobulewild-type
1765Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0
2003Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2005Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2316Detail       leaf [A. thaliana] PG plastoglobule 
2317Detail       leaf [A. thaliana] PG plastoglobule 
2398Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/35SRecA-GFP

* For details about the exprimental sources click here.

Published Proteomics Data

 17951448(peroxisome (leaves))
19329564(peroxisomes (leaf))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help