PPDB

PPDB	The Plant Proteome Database

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AT3G50670.1 U1 small nuclear ribonucleoprotein-70K

Lab Annot.

U1-70K (SPLICEOSOMAL PROTEIN U1A); RNA binding
Mapman: 35.1 not assigned.no ontology

Curated Location

TAIR curated location: nucleus15133128

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G50670.2 11 Arabidopsis thaliana 4E-120 167 100 100 0 (0) C
AT2G43370.1 11 Arabidopsis thaliana 6E-21 266 33 50 0 (0) _
AT2G43370.2 11 Arabidopsis thaliana 5E-20 104 43 60 0 (0) _
Os10g02630.1 7 Oryza sativa 1E-124 264 70 82 10 (10) _
Os09g33870.1 7 Oryza sativa 1E-26 125 44 60 0 (0) _
Os01g31810.2 7 Oryza sativa 8E-12 81 35 61 0 (0) M
Zm00001eb224440_P002 agpv5 Zea mays 5E-117 261 68 80 0 (0) _
v1_GRMZM2G113592_P02 4a53 Zea mays 5E-117 261 68 80 18 (18) _
GRMZM2G113592_P02 3.21 Zea mays 5E-117 261 68 80 1 (1) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	RRM_1(1) U1snRNP70_N(2)
TargetP:	Chloroplast (Class 5 C0.525; M0.123; S0.031; _0.467)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	427 aa (-cTP 410)
Molecular Weight	50.39 kDA(-cTP 48.62)
PI	9.39(-cTP 9.44)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1545	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	wt
1574	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	k2k3
1576	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	K2K3
1577	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	WT
2236	Detail								seedlings [A. thaliana]	total tissue	gfs9
2237	Detail								seedlings [A. thaliana]	total tissue	gfs9
2238	Detail								seedlings [A. thaliana]	total tissue	gfs9
2239	Detail								seedlings [A. thaliana]	total tissue	gfs9
2240	Detail								seedlings [A. thaliana]	total tissue	gfs9
2241	Detail								seedlings [A. thaliana]	total tissue	gfs9
2242	Detail								seedlings [A. thaliana]	total tissue	gfs9
2246	Detail								seedlings [A. thaliana]	total tissue	gfs9
2247	Detail								seedlings [A. thaliana]	total tissue	atg5
2254	Detail								leaf [A. thaliana]	total seedlings	gfs9
2255	Detail								leaf [A. thaliana]	total seedlings	gfs9
2256	Detail								leaf [A. thaliana]	total seedlings	gfs9
2257	Detail								leaf [A. thaliana]	total seedlings	gfs9
2258	Detail								leaf [A. thaliana]	total seedlings	gfs9
2259	Detail								leaf [A. thaliana]	total seedlings	gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

19200160(flower-stage 12)
19546170(mature pollen grains)
19253305(phosphoproteins (etiolated seedling))
19376835(leaf phosphoproteins)
20166762(guard cells (Arabidopsis))
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
20813957(SUMO proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data