PPDB

The Plant Proteome Database

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AT3G50670.1   U1 small nuclear ribonucleoprotein-70K

Lab Annot. U1-70K (SPLICEOSOMAL PROTEIN U1A); RNA binding
Mapman: 35.1 not assigned.no ontology
Curated Location
TAIR curated location: nucleus15133128
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G50670.2 11Arabidopsis thaliana4E-1201671001000 (0)C
AT2G43370.1 11Arabidopsis thaliana6E-2126633500 (0)_
AT2G43370.2 11Arabidopsis thaliana5E-2010443600 (0)_
Os10g02630.1 7Oryza sativa1E-124264708210 (10)_
Os09g33870.1 7Oryza sativa1E-2612544600 (0)_
Os01g31810.2 7Oryza sativa8E-128135610 (0)M
Zm00001eb224440_P002 agpv5Zea mays5E-11726168800 (0)_
v1_GRMZM2G113592_P02 4a53Zea mays5E-117261688018 (18)_
GRMZM2G113592_P02 3.21Zea mays5E-11726168801 (1)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: RRM_1(1) U1snRNP70_N(2)
TargetP: Chloroplast (Class 5 C0.525; M0.123; S0.031; _0.467)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 427 aa (-cTP 410)
Molecular Weight 50.39 kDA(-cTP 48.62)
PI 9.39(-cTP 9.44)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1545Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1574Detail       leaf [A. thaliana] TiO2 thylakoid membranek2k3
1576Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1577Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT
2236Detail       seedlings [A. thaliana] total tissue gfs9
2237Detail       seedlings [A. thaliana] total tissue gfs9
2238Detail       seedlings [A. thaliana] total tissue gfs9
2239Detail       seedlings [A. thaliana] total tissue gfs9
2240Detail       seedlings [A. thaliana] total tissue gfs9
2241Detail       seedlings [A. thaliana] total tissue gfs9
2242Detail       seedlings [A. thaliana] total tissue gfs9
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2254Detail       leaf [A. thaliana] total seedlings gfs9
2255Detail       leaf [A. thaliana] total seedlings gfs9
2256Detail       leaf [A. thaliana] total seedlings gfs9
2257Detail       leaf [A. thaliana] total seedlings gfs9
2258Detail       leaf [A. thaliana] total seedlings gfs9
2259Detail       leaf [A. thaliana] total seedlings gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

19200160(flower-stage 12)
19546170(mature pollen grains)
19253305(phosphoproteins (etiolated seedling))
19376835(leaf phosphoproteins)
20166762(guard cells (Arabidopsis))
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
20813957(SUMO proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data


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