PPDB

 The Plant Proteome Database

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AT3G50100.1   small RNA degrading nuclease 1
Lab Annot. small RNA degrading nuclease 1
Mapman: 28.99 DNA.unspecified
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G50100.2 11Arabidopsis thaliana03121001000 (0)_
AT5G67240.2 11Arabidopsis thaliana7E-17842560760 (0)_
AT5G67240.3 11Arabidopsis thaliana4E-17642560760 (0)_
Os04g55700.1 7Oryza sativa3E-10841444620 (0)_
Os12g08740.2 7Oryza sativa4E-2414440600 (0)S
Os12g08740.1 7Oryza sativa3E-2314440600 (0)C
GRMZM2G082097_P01 3.21Zea mays5E-10741644620 (0)_
Zm00001eb068290_P002 agpv5Zea mays2E-10641644620 (0)_
Zm00001eb068290_P001 agpv5Zea mays7E-10641643610 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DNA_pol_A_exo1(2) DUF5051(1) RNase_T(1) RRM_1(1)
TargetP: Cytoplasm (Class 2 C0.062; M0.103; S0.103; _0.827)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 409 aa (-cTP 404)
Molecular Weight 46.36 kDA(-cTP )
PI 5.43(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

 21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help