PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G49390.1   CTC-interacting domain 10

Lab Annot.
Mapman: 27.4 RNA.RNA binding
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G49390.3 11Arabidopsis thaliana03531001000 (0)_
AT3G49390.2 11Arabidopsis thaliana03531001000 (0)_
AT1G32790.1 11Arabidopsis thaliana4E-13527371830 (0)C
Os08g02330.1 7Oryza sativa1E-12928567770 (0)_
Os01g11120.1 7Oryza sativa1E-11027760721 (1)_
Os06g35030.3 7Oryza sativa4E-10030954650 (0)S
GRMZM2G173428_P01 3.21Zea mays1E-12929266773 (1)_
v1_GRMZM2G173428_P01 4a53Zea mays1E-12929266770 (0)_
Zm00001eb260870_P005 agpv5Zea mays2E-12929166760 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: PAM2(1) RRM_1(3)
TargetP: Cytoplasm (Class 3 C0.368; M0.057; S0.073; _0.783)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon: 1 TMs
TAT position:
Length 353 aa (-cTP 350)
Molecular Weight 38.74 kDA(-cTP )
PI 6.34(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help