PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT3G49240.1 Pentatricopeptide repeat (PPR) superfamily protein

Lab Annot.

pentatricopeptide repeat (PPR) protein (NUWA); perhaps both mito & plastid?
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein

Curated Location

mitochondria (Pubmed: 28760958 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G10270.1 11 Arabidopsis thaliana 1E-88 611 34 51 2 (2) M
AT1G09900.1 11 Arabidopsis thaliana 7E-42 418 25 47 2 (2) _
AT3G09060.1 11 Arabidopsis thaliana 7E-36 472 22 47 0 (0) _
Os11g24570.1 7 Oryza sativa 0 518 53 72 2 (2) M
Os05g45760.1 7 Oryza sativa 4E-112 481 40 61 0 (0) M
Os05g30240.1 7 Oryza sativa 3E-92 473 35 58 3 (3) M
Zm00001eb161270_P001 agpv5 Zea mays 0 502 50 71 0 (0) M
GRMZM2G074599_P01 3.21 Zea mays 0 502 50 71 13 (10) M
v1_GRMZM2G074599_P01 4a53 Zea mays 0 502 50 71 8 (8) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	ATP13(2) BTAD(3) Herpes_U44(2) HGTP_anticodon2(1) PPR(10) PPR_1(9) PPR_2(11) PPR
TargetP:	Mitochondria (Class 3 C0.174; M0.659; S0.015; _0.036)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	629 aa (-cTP 597)
Molecular Weight	71.29 kDA(-cTP )
PI	5.41(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
303	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
361	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
527	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt1)
542	Detail								leaf [A. thaliana]	stroma (FPLC) >500 kDa (HMB)	wild-type
543	Detail								leaf [A. thaliana]	stroma (FPLC) >600 kDa (HMA)	wild-type
870	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
871	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
1350	Detail								leaf [A. thaliana]	total tissue (5 day HL)	abck2xabck3 (rep. 3)
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1528	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1638	Detail								leaf [A. thaliana]	total leaf tissue stroma	Wild-type
2289	Detail								[A. thaliana]		Clp C1 TRAP
2291	Detail								[A. thaliana]		Clp C1 TRAP
2296	Detail								[A. thaliana]		Clp C1 WT
2297	Detail								[A. thaliana]		Clp C1 WT
2298	Detail								[A. thaliana]		Clp C1 WT
2302	Detail								[A. thaliana]		Clp C1 WT
2304	Detail								[A. thaliana]		Clp C1 WT
2305	Detail								[A. thaliana]		Clp C1 TRAP
2306	Detail								[A. thaliana]		Clp C1 TRAP
2307	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

17137349(ATP-binding-mitochondria cell suspension)
18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))
20423899(chloroplast)
20706207(cell cycle interactome (cell culture))
21311031(mitochondria)
21841088(mitochondria (2DE native gel))
21173025(root proteome)
21472856(mitochondrial-reference-proteome-Millar-Nov2011)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data